PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_B86B36F67.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 155aa    MW: 16938.5 Da    PI: 10.3361
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_B86B36F67.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-302281159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +Cpvkkkv+rsaed++v++ tY g+Hnh 
  Traes_7DL_B86B36F67.1 22 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCPVKKKVQRSAEDKTVLVATYDGDHNHA 81
                           58***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.6141783IPR003657WRKY domain
SuperFamilySSF1182901.18E-252183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-292183IPR003657WRKY domain
SMARTSM007742.6E-332282IPR003657WRKY domain
PfamPF031061.1E-242380IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
VKASRVSKLY VHADPSDLSL VVKDGYQWRK YGQKVTKDNP CPRAYFRCSF APSCPVKKKV  60
QRSAEDKTVL VATYDGDHNH APPPKQQGSG GRKSGXXXXX XXPALVQQQQ KQEASTAEQV  120
ADRKNLVEQM AATLTRDPGF KAALASALSG RIPVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23784175WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589511e-142AK358951.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1086E07.
GenBankKC7762681e-142KC776268.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659853.14e-67PREDICTED: probable WRKY transcription factor 40
SwissprotQ9C5T45e-51WRK18_ARATH; WRKY transcription factor 18
TrEMBLW5I2P11e-105W5I2P1_WHEAT; Uncharacterized protein
STRINGMLOC_70190.16e-84(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.13e-49WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]